Code
This is the code for some of the research conducted within my group. Most pieces of code come as an archive which may also contain some datasets. The code is made available under the GNU General Public License v3 for research purposes and under the condition that the corresponding paper is properly cited. You are requested to contact me for a use towards any other purposes.Code for our research is also available from my students and colleagues, in particular:
- Toby Collins, GitHub
- Shaifali Parashar, GitHub
- Florent Brunet, Homepage
- Fang Bai, BitBucket
- Agniva Sengupta, GitHub
General | |
 | 3D Shape Registration Paper (3DIAA 2020) | Code (Python) [by R. P. Christopher] |
| Stratified Generalized Procrustes Analysis Paper (IJCV 2013) | Code (Matlab / has data) [with D. Pizarro] | Code (Matlab / has data) [optimised by F. Bai] |
| KAZE and AKAZE Features An implementation also comes bundled with OpenCV and Matlab Paper (ECCV 2012) [KAZE] | Paper (BMVC 2013) [AKAZE] | Code [with P. Alcantarilla] | Code [independent code] |
| Shape-from-Shading for Laparoscopy Paper (IPCAI 2012) | Code (Matlab / has data) [with T. Collins] |
| FlatReg: Monocular Registration in Laparoscopy Paper (WBIR 2012) | Code (Matlab / has data) [with J.-H. Kim] | Code (Matlab / has data) [with T. Collins; required library] | Code (Matlab / has data) [with T. Collins; required library] |
| GAIM: Graph-based Affine Invariant Matching Paper (ECCV 2014) | Code (Matlab / has data) [with P. Mesejo] | Code (Matlab / has data) [with T. Collins] |
| St-DR: Generative Paper Model and Stereoscopic Developable Surface Reconstruction A paper model to create interactive and random isometric embeddings of the plane and an image-based reconstruction method for this model Paper (CAVW 2013) | Code (Matlab / has data) [with M. Perriollat; requires GTPSW] |
| OTTPAO: Optimal Triangle Projection with Prescribed Area and Orientation Paper (GMOD 2021) | Code (Matlab / has data) [with C. Arango] | Code [original code] |
Classical Multiple-View Geometry and 3D Reconstruction | |
| Pol-Tri: Point-on-Line Triangulation Paper (IVC 2008) | Code (Matlab) |
| MAC: Metric Affine Corrections Paper (CVIU 2015) | Code (Matlab) |
| IPPE: Infinitesimal Plane-based Pose Estimation An implementation also comes bundled with OpenCV Paper (IJCV 2014) | Code (Matlab and C++) [with T. Collins] | Code (Matlab) [with T. Collins] | Code (Matlab) |
| PMAR: Plane-based Metric Affine Resection Resection of the three classical metric affine models: analytic procedures for point correspondences Paper (JMIV 2018) | Code (Matlab) |
Rigid Image Registration | |
| DIRT: Direct homography computation with global lighting variation Paper (PAMI 2008) | Code (Matlab / has data) | Code (C, OpenCV) [with P. Fite-Georgel] |
| DirectH: Direct homography computation with global lighting variation A prequel of DIRT Paper (LIMA 2006) | Code (Matlab / has data) |
| FB-MV-H: Feature-Based Multiple-View Homographies Code (Matlab) |
Deformable Image Registration | |
| GTPSW: Generalized Thin-Plate Spline Warps Paper (IJCV 2010) | Code (Matlab) |
| PB-DR-SO: Pixel-Based Direct Registration in spite of Self-Occlusions Paper (PAMI 2010) | Code (Matlab / has data) [with V. Gay-Bellile] |
| Feature-Based Deformable Surface Detection Paper (IJCV 2012) | Code (Matlab / has data) [with D. Pizarro] | Code (C++ / has data) [with P. Alcantarilla] |
| Schwarps: estimation of image warps preserving local projective properties using the Schwarzian derivatives Warps based on the F. Brunet's BBS toolbox, with analytic derivatives coded by S. Parashar Paper (IJCV 2016) | Code (Matlab / has data) [with D. Pizarro and R. Khan] |
| 3DMRI-2DUS-Registration Paper (CMIG 2015) | Code (Matlab / has data) [with A. Yavariabdi] |
Shape-from-Template | |
| NISfT: a Perspective on Non-Isometric Shape-from-Template Paper (ISMAR 2016) | Code (Matlab / has data) |
| ROBUSfT Paper (IVC 2023) | Code (C++) [with M. Shetab-Bushehri et al.] |
| TB-Mo-DR-MD: Template-Based Monocular Developable Reconstruction with the Maximum Depth Heuristic Paper (IJCV 2011) | Code (Matlab / has data) [with M. Perriollat; requires GTPSW] |
| RIS: Reconstruction of Inextensible Surfaces and Associated Tools (including BBS: Bicubic B-Splines) Paper (CVIU 2014) | Code [with F. Brunet] |
| Matlab SfT Toolbox Paper (PAMI 2015) | Paper (PAMI 2017) | Code (Matlab / has data) [with D. Pizarro and A. Chhatkuli] |
| External implementation of SfT in Python Paper (PAMI 2015) | Code (Python) [by Tzu-Ting] |
| QIVSfT: Quasi-Isometric Volumic SfT Paper (ICCV 2015) | Code (Matlab / has data) [with S. Parashar] |
| FastSfT: Fast Shape-from-Template Using Local Features Paper (MVA 2017) | Code (Matlab / has data) [with M. Famouri] | Code (Matlab / has data) [experiment scripts] | Code (Matlab / has data) [experimental comparisons] |
Non-Rigid Structure-from-Motion | |
| SCIso-NRSfM: A local solution of isometric NRSfM with self-calibration of the camera's focal length Paper (ECCV 2018) | Code (Matlab / has data) [with S. Parashar] |
| Local-Iso-NRSfM: A local solution of isometric NRSfM's PDE Both the infinitesimal planarity and full curvature versions are given Paper (PAMI 2018) | Code (Matlab / has data) [with S. Parashar] |
| MDH: An SOCP-based (thus convex) solution to Non-Rigid Shape-from-Motion Paper (PAMI 2018) | Code (Matlab / has data) [with A. Chhatkuli] |
| LIIP: Local Isometric and Infinitesimally Planar Non-Rigid Shape-from-Motion Paper (BMVC 2014) | Code (Matlab / has data) [with A. Chhatkuli] |
| C2F-LR-SfM: Coarse-to-Fine Low-Rank Structure-from-Motion Paper (CVPR 2008) | Code (Matlab / has data) [with V. Gay-Bellile] |
Sensor Calibration | |
| LUSCAL: Laparoscopic Ultrasound Probe Calibration Including Phantom Design Paper (TCIV 2022) | Code (Matlab) [with N. Rabbani et al.] | Code (Data / has data) [companion calibration data] | Dataset (Matlab) [companion evaluation dataset and protocol] |
Datasets
These are datasets for some of the research conducted within my group. The datasets are made available under the GNU General Public License v3 for research purposes and under the condition that the corresponding paper is properly cited. You are requested to contact me for a use towards any other purposes.Rigid Environments | |
 | Desktop Paper (PAMI 2004) | Dataset |
Deformable Surfaces and Objects | |
 | Handbag Paper (ICCV 2017) | Dataset [with M. Gallardo] |
 | Pillow Cover Paper (ICCV 2017) | Dataset [with M. Gallardo] |
 | Creased Paper Paper (ICCV 2017) | Dataset [with M. Gallardo] |
 | Can Paper (PAMI 2017) | Dataset [with A. Chhatkuli] |
 | Cushion Paper (PAMI 2017) | Dataset [with A. Chhatkuli] |
 | Zooming Paper (PAMI 2017) | Dataset [with A. Chhatkuli] |
 | Fortune Teller Paper Paper (BMVC 2016) | Dataset [with M. Gallardo] |
 | Floral Paper Paper (BMVC 2016) | Dataset [with M. Gallardo] |
 | Synthetic Rubber Paper (IJCV 2017) | Dataset [with R. Khan] |
 | Hulk Paper Paper (BMVC 2014) | Dataset [with A. Chhatkuli] |
 | White Cartoon Tshirt Paper (BMVC 2014) | Dataset [with A. Chhatkuli] |
 | Baseball Cap Paper (CVPR 2013) | Dataset [with A. Malti] |
 | Cook Book Paper (ECCV 2014) | Dataset [with P. Mesejo and T. Collins] |
 | Stereo Toy Rug Paper (ICRA 2006) | Dataset |
 | Bears Duvet 1 Paper (CVPR 2004) | Dataset |
 | Newspaper 1 Paper (BMVC 2004) | Dataset |
 | Tshirt 1 Paper (BMVC 2004) | Dataset |
 | Camiseta Paper (JMIV 2019) | Dataset [with D. Casillas and A. Sengupta] |
 | Fancy Leggings Paper (JMIV 2019) | Dataset [with D. Casillas and A. Sengupta] |
 | Pirate Balloon Paper (JMIV 2019) | Dataset [with D. Casillas and A. Sengupta] |
Laparoscopy | |
 | SurgAI3.8K (laparoscopic images of the uterus with contours) Paper (JMIG 2023) | Dataset [with S. Madad-Zadeh et al] |
 | DePoLL (Deformable Porcine Liver Laparoscopy) Paper (IJCARS 2019) | Dataset [with R. Modrzejewski and T. Collins] |
 | Bleeding Segmentation (laparoscopic images with segmented bleeding sources) Paper (MIDL 2022) | Dataset [with C. Sève-d'Erceville, N. Bourdel, N. Rabbani] |
 | Semisynthetic Liver (simulated deformations of a 3D model reconstructed from CT) Paper (MICCAI 2021) | Dataset [with K. Botros] |
 | Laparoscopic Liver Resection (LLR) Augmented Reality Evaluation with Laparoscopic Ultrasound (LUS) Paper (TCIV 2021) | Dataset (has code) [with N. Rabbani et al.] |
 | Liver Model for Patient-Generic Laparoscopic Liver Resection (LLR) Augmented Reality Paper (MICAD 2024) | Dataset [with M. Labrunie et al.] |
Other Medical | |
 | LiTS Landmarks Manual anatomical landmarks for some volumes of the public LiTS dataset Paper (IJCV 2022) | Dataset [with N. Loiseau-Witon] |
 | TOPACS6 Correspondences Automatic correspondences of 3D keypoints for six full-body CT scans Paper (IJCV 2022) | Dataset [with S. Valette and F. Bai] |